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Welcome to the GenomeWeb Nucleic Acid Sequence Editors and Formats Search for:

BOXSHADE - pretty printing of multiple alignments
RSVP: Rapid Sequence Visualisation in PostScript
CINEMA - Colour INteractive Editor for Multiple Alignments
WebLogo Sequence Logo Generation Main Form

Detailed information on the above options

BOXSHADE - pretty printing of multiple alignments
This program generates publication-quality (or editable) graphics from multiple-alignment files. Many different input- and output-formats are supported. Conserved and/or similar residues are emphasized by various degrees of shading. It is also possible to specify a similarity-threshold that has to be reached for shading a residue.

RSVP: Rapid Sequence Visualisation in PostScript
RSVP is a suite of visually-oriented sequence analysis routines implemented entirely in the page description language PostScript. It is intended to provide a quick look at DNA up to about the length of a sequencing run, using form and color to help point out patterns, in advance of more sophisticated sequence analyses.

CINEMA - Colour INteractive Editor for Multiple Alignments
Java program for multiple alignment of protein or nucleic acid sequences.

WebLogo Sequence Logo Generation Main Form
Visualization of the conservation (and more!) of the columns of an alignment