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MADS Domain Protein Phylogeny Reconstructions

The phylogenetic trees linked from this page were constructed from alignments which were computed as outlined on the alignment page. All protein sequences from the genes listed in the MADS box gene list are included in this analysis. Phylogeny reconstruction was performed with the Phylogeny Inference Package (PHYLIP). Distance matrices were calculated from the alignments with the protdist program, and these were used to construct phylogenies by neighbor joining with the neighbor program. The trees are made available in the "New Hampshire" source format, which you may use to view the trees with programs like treetool or treeview. Additionally, PostScript graphics are provided, which you can view directly with your web browser if your browser can display PostScript or it is configured to use a viewer application, such as ghostview, for this purpose. As another option, we also provide GIF files which are generated from the PostScript graphics using ghostscript.
Home Alignments Phylogeny

Jan T. Kim (kim@mpiz-koeln.mpg.de)